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Genomsawit Website
Official Portal Of
Malaysian Oil Palm Genome Programme (MyOPGP)
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The oil palm genome was a combination of PacBio long-read sequencing, proximity ligation sequencing, optical mapping and genetic map guided assembly. Below are the statistics for the Pisifera Genome Build (P11d2)
| EG5.1 | EG11 | |
| Total number of reads | 40,072 | 39 |
| Total Bases (bp) | 1,535,179,082 | 1,867,267,987 |
| GC content | 37.21 % | 38.54% |
| Maximum length (bp) | 68,435,666 | 186,201,133 |
| Minimum length (bp) | 1,992 | 93,154 |
| N50 length (bp) | 1,268,079 | 128,314,321 |
| N90 length (bp) | 32,090 | 69,731,926 |
| Total no. bases in 16 Chromosomes | 657,968,836 | 1,777,716,855 |
The EO12.1 genome represents the first chromosome-scale reference assembly for Elaeis oleifera. It was developed using PacBio long-read sequencing, proximity ligation sequencing, optical mapping, and genetic-map-guided assembly
| Total number of reads | 26 |
|---|---|
| Total Bases (bp) | 2,042,916,827 |
| GC content | 39.33% |
| Maximum length (bp) | 226,035,659 |
| Minimum length (bp) | 89,593 |
| N50 length (bp) | 141,087,874 |
| N90 length (bp) | 79,040,982 |
| Total no. bases in 16 Chromosomes | 2,022,763,378 |