| Name | Section | Information | Size | Date |
|---|---|---|---|---|
| AM_EG5.1 | GENOME | The chromosomal-level assembly of the African oil palm has been improved by integrating multiple genetic maps and maximizing the collinearity between the input maps and order of the genomic scaffolds. About 828 Mb (~54%) of the African oil palm genome has been successfully incorporated into 16 pseudo-chromosomes. | 804 Mb (FASTA) 49 Kb (AGP) | October, 2021 |
| Name | Section | Information | Size | Date |
|---|---|---|---|---|
| EG5.1 linked scaffolds | GENOME | The latest version of EG5 Genome where 100 nucleotides of gap sequences (N) were introduced between the scaffolds used to make the 16 EG5.1 chromosomes. The EG5.1 chromosomes were constructes from the P5-build using the T128 and P2 genetic maps. The remaining P5 scaffolds not linked to the genetic maps were also included | 329.50 Mb | June, 2017 |
| EG5.1_Genes.V3 | GENES | A gzip gff3 file of Version 3 on EG5.1 dataset which introducing 100 nucleotide of gap sequences (N) were introduced between scaffolds. | 5.9 Mb | Sep, 2017 |
| Oil Palm 92K Infinium HD SNP Array | MARKERS | The file contains the information about the Oil Palm 92K Infinium® HD SNP Array SNP information including SNP variants, sequences and mapping locations (linkage groups) from Ting et al. (2023) | 1.67 Mb | Oct, 2023 |
| Oil Palm 78K Infinium HD SNP Array | MARKERS | The file contains the information about the Oil Palm 78K Infinium® HD SNP Array SNP information including SNP variants, sequences and mapping locations (linkage groups) from Ting et al. (2023) | 11.66 Mb | May, 2023 |
| SNP and SNPE markers | MARKERS | The file contains the information about SNP variants, sequences and mapping locations (linkage groups) from Yaakub et al. (2020) | 225 Kb | May, 2020 |
| SNPE markers | MARKERS | The file contains the information about SNP variants, sequences and mapping locations (linkage groups) from Ting et al. (2016) | 17.69 Kb | April, 2016 |
| SNP markers | MARKERS | The file contains the information about SNP variants, sequences and mapping locations (linkage groups) from Ting et al. (2014) | 231.44 Kb | May, 2014 |
| Candidates SSR markers | MARKERS | File contains the information about SSR types, motifs, primer sequences, primers annealing temperature (TA°C), amplified fragment sequence and the mapping locations (start and end sites on EG5, bp) from Ting et. al. 2020 | 40.67 Kb | July, 2020 |
| SSR Eguineensis | MARKERS | File contains the information about SSR types, motifs, primer sequences, primers annealing temperature (TA°C), amplified fragment sequence and the mapping locations (start and end sites on EG5, bp) from Yaakub et al. 2020 | 17.71 Kb | May, 2020 |
| Name | Section | Information | Size | Date |
|---|---|---|---|---|
| EG5 linked scaffolds | GENOME | The file contains 16 EG5 chromosomes (genetic scaffolds) and 40,056 P5 scaffold sequences. The EG5 chromosomes resulted from a comparison of the P5-build to T128 and P2 genetic maps. The 40,056 P5 scaffolds are the scaffolds that were not incorporated into the EG5 chromosomes. | 328.69 Mb | June, 2013 |
| Pisifera (P5) scaffolds | GENOME | The file contains scaffold sequences from the pisifera P5-build. | 329.78 Mb | June, 2013 |
| EG5_Genes.V3 Protein | GENES | A gzip file of nucleotide sequences for representative gene models (Version 3) of pisifera P5-build. | 9.8 Mb | Sep, 2017 |
| EG5_Genes.V3 mRNA | GENES | A gzip file of amino acid sequences for representative gene models (Version 3) of pisifera P5-build. | 6.2 Mb | Sep, 2017 |
| EG5_Genes.V3 GFF3 | GENES | A gzip gff3 file of Version 3 predicted genes. | 5.7 Mb | Sep, 2017 |
| EG5_Genes.V2 Protein | GENES | A gzip file of predicted nucleotide sequences (Version 2) of the EG5 pisifera genome that had similarity to known genes in RefSeq. | 6.14 Mb | Feb, 2014 |
| EG5_Genes.V2 mRNA | GENES | A gzip file of predicted amino acid sequences (Version 2) of the EG5 pisifera genome that had similarity to known genes in RefSeq. | 9.00 Mb | Feb, 2014 |
| EG5_Genes.V2 GFF3 | GENES | A gzip gff3 file of Version 2 predicted genes. | 2.18 Mb | Feb, 2014 |
| EG5_Genes.V1 Protein | GENES | The file contains nucleotide sequences of predicted genes (Version 1) from the EG5 pisifera genome that had similarity to known genes in RefSeq. | 7.27 Mb | June, 2013 |
| EG5_Genes.V2 mRNA | GENES | The file contains amino acid sequences of predicted genes (Version 1) from the EG5 pisifera genome that had similarity to known genes in RefSeq. | 10.49 Mb | July, 2013 |
| sPSc Eguineensis | MARKERS | The file contains the information about SSR types, motifs, primer sequences, primers annealing temperature (TA°C), expected fragment size (bp) and mapping locations (linkage groups) from Ting et al. (2016) | 14.47 Kb | April, 2016 |
| SSR Eguineensis | MARKERS | The file contains the information about SSR types, motifs, primer sequences, primers annealing temperature (TA°C), expected fragment size (bp) and mapping locations (linkage groups) from Ting et al. (2014) | 25.53 Kb | July, 2014 |