Welcome to Malaysian Oil Palm Genome Programme Website

Login to MPOB_OPGP

Web Statistics

Visitors : Untitled Document 113,073

Links

Ministry of Plantation and Commodities
(KPK)

Malaysian Palm Oil Board
(MPOB)

Advanced Biotechnology and Breeding Centre
(ABBC)

Technical Support

abbc.opgp@mpob.gov.my

Oil palm genome overview

Comparison of the Pisifera genome build-5 (P5) to the two genetic maps (T128 and P2) resulted in 16 genetic scaffolds (one per chromosome), which represents; 43% of the P5 build. Listed below are the IDs and orientation of 304 scaffolds that makes up 16 chromosomes uploaded into Gbrowse.

Download xlsx format

#	Chromosome	Scaffold	Orientation	START	END
1	1	p5_sc00105	Reverse	1	2454704
2	1	p5_sc00028	Forward	2454805	7568064
3	1	p5_sc00126	Reverse	7568165	9584112
4	1	p5_sc10869	Forward	9584213	9588164
5	1	p5_sc00059	Reverse	9588265	13321468
6	1	p5_sc00166	Reverse	13321569	14789975
7	1	p5_sc00065	Reverse	14790076	18249712
8	1	p5_sc00008	Reverse	18249813	25962399
9	1	p5_sc00175	Forward	25962500	27842632
10	1	p5_sc00410	Reverse	27842733	28363273
11	1	p5_sc00038	Reverse	28363374	33013697
12	1	p5_sc00027	Forward	33013798	38149735
13	1	p5_sc00609	Forward	38149836	38488779
14	1	p5_sc00072	Reverse	38488880	41693165
15	1	p5_sc00095	Reverse	41693266	44295753
16	1	p5_sc00118	Reverse	44295854	46884955
17	1	p5_sc00372	Forward	46885056	47538507
18	1	p5_sc00941	Forward	47538608	47690982
19	1	p5_sc01856	Forward	47691083	47776925
20	1	p5_sc00369	Forward	47777026	48580051
21	1	p5_sc00396	Forward	48580152	49199254
22	1	p5_sc00026	Forward	49199355	55079270
23	1	p5_sc00589	Forward	55079371	55452495
24	1	p5_sc00029	Reverse	55452596	60732758
25	1	p5_sc00154	Forward	60732859	62493974
26	1	p5_sc00159	Reverse	62494075	64354590
27	1	p5_sc00079	Forward	64354691	67363561
28	1	p5_sc00238	Forward	67363662	68435666
29	2	p5_sc00060	Reverse	1	3503101
30	2	p5_sc00263	Reverse	3503202	4420287
31	2	p5_sc00051	Reverse	4420388	8348779
32	2	p5_sc00146	Reverse	8348880	10549018
33	2	p5_sc00043	Forward	10549119	15247634
34	2	p5_sc00241	Forward	15247735	16327313
35	2	p5_sc00110	Forward	16327414	18841581
36	2	p5_sc00275	Forward	18841682	19710937
37	2	p5_sc00012	Forward	19711038	26077793
38	2	p5_sc00571	Forward	26077894	26407950
39	2	p5_sc00034	Forward	26408051	31342532
40	2	p5_sc00073	Forward	31342633	34591206
41	2	p5_sc00082	Forward	34591307	37611090
42	2	p5_sc01040	Forward	37611191	37832009
43	2	p5_sc00055	Reverse	37832110	41514344
44	2	p5_sc00005	Forward	41514445	49737100
45	2	p5_sc00096	Reverse	49737201	52360268
46	2	p5_sc00042	Forward	52360369	56724265
47	2	p5_sc00173	Forward	56724366	58238765
48	2	p5_sc00025	Forward	58238866	63802476
49	2	p5_sc00148	Forward	63802577	65558141
50	3	p5_sc00220	Forward	1	1184827
51	3	p5_sc00104	Forward	1184928	3779198
52	3	p5_sc00001	Forward	3779299	25879908
53	3	p5_sc00054	Forward	25880009	29565281
54	3	p5_sc00100	Forward	29565382	32292044
55	3	p5_sc00066	Forward	32292145	35898983
56	3	p5_sc00606	Forward	35899084	36194005
57	3	p5_sc00064	Forward	36194106	39703272
58	3	p5_sc00304	Forward	39703373	40735249
59	3	p5_sc01468	Forward	40735350	40923213
60	3	p5_sc00339	Forward	40923314	41795367
61	3	p5_sc00420	Forward	41795468	42338239
62	3	p5_sc00152	Forward	42338340	44217949
63	3	p5_sc00490	Forward	44218050	44789349
64	3	p5_sc00145	Reverse	44789450	46982130
65	3	p5_sc00124	Reverse	46982231	49451849
66	3	p5_sc00513	Forward	49451950	49913995
67	3	p5_sc00142	Forward	49914096	52215791
68	3	p5_sc00041	Reverse	52215892	57144675
69	3	p5_sc00170	Forward	57144776	58717147
70	3	p5_sc00199	Forward	58717248	60060032
71	4	p5_sc00179	Forward	1	1495235
72	4	p5_sc00237	Forward	1495336	2847310
73	4	p5_sc00281	Forward	2847411	3872449
74	4	p5_sc07586	Forward	3872550	3878091
75	4	p5_sc20880	Forward	3878192	3880921
76	4	p5_sc00048	Forward	3881022	8109368
77	4	p5_sc00183	Forward	8109469	9480802
78	4	p5_sc00098	Forward	9480903	11940559
79	4	p5_sc00132	Forward	11940660	14159915
80	4	p5_sc00340	Forward	14160016	14828277
81	4	p5_sc00230	Forward	14828378	16202387
82	4	p5_sc00262	Forward	16202488	17237116
83	4	p5_sc00486	Forward	17237217	17861853
84	4	p5_sc00345	Forward	17861954	18641460
85	4	p5_sc00355	Forward	18641561	19313487
86	4	p5_sc00163	Forward	19313588	21354613
87	4	p5_sc00153	Forward	21354714	23356507
88	4	p5_sc36134	Forward	23356608	23358719
89	4	p5_sc00187	Forward	23358820	24958251
90	4	p5_sc00385	Forward	24958352	25654674
91	4	p5_sc00097	Forward	25654775	28325315
92	4	p5_sc00273	Forward	28325416	29378597
93	4	p5_sc00085	Reverse	29378698	32571698
94	4	p5_sc00140	Reverse	32571799	34357827
95	4	p5_sc00231	Forward	34357928	35439377
96	4	p5_sc00360	Forward	35439478	36046343
97	4	p5_sc00508	Forward	36046444	36446596
98	4	p5_sc00016	Forward	36446697	42774256
99	4	p5_sc00348	Forward	42774357	43411160
100	4	p5_sc00023	Forward	43411261	48652488
101	4	p5_sc00332	Forward	48652589	49419849
102	4	p5_sc24556	Forward	49419950	49422463
103	4	p5_sc00075	Forward	49422564	52676267
104	4	p5_sc20616	Forward	52676368	52679121
105	4	p5_sc33237	Forward	52679222	52681420
106	4	p5_sc00083	Forward	52681521	55883709
107	4	p5_sc00205	Forward	55883810	57251647
108	5	p5_sc00069	Forward	1	3153946
109	5	p5_sc00121	Reverse	3154047	5176014
110	5	p5_sc00007	Forward	5176115	13629577
111	5	p5_sc00102	Forward	13629678	16657785
112	5	p5_sc00184	Forward	16657886	18315757
113	5	p5_sc00021	Reverse	18315858	24434252
114	5	p5_sc00172	Forward	24434353	26120492
115	5	p5_sc00468	Forward	26120593	26659009
116	5	p5_sc00158	Forward	26659110	28537380
117	5	p5_sc02507	Forward	28537481	28599610
118	5	p5_sc01598	Forward	28599711	28703878
119	5	p5_sc00056	Reverse	28703979	32716047
120	5	p5_sc00094	Forward	32716148	35373314
121	5	p5_sc00979	Forward	35373415	35643137
122	5	p5_sc00086	Forward	35643238	38494863
123	5	p5_sc00362	Forward	38494964	39204040
124	5	p5_sc00003	Reverse	39204141	49146760
125	5	p5_sc00084	Reverse	49146861	51955539
126	6	p5_sc00136	Forward	1	1993310
127	6	p5_sc00127	Forward	1993411	4165660
128	6	p5_sc14825	Forward	4165761	4169033
129	6	p5_sc00151	Forward	4169134	5938308
130	6	p5_sc00161	Forward	5938409	7596540
131	6	p5_sc03190	Forward	7596641	7641310
132	6	p5_sc00268	Forward	7641411	8849300
133	6	p5_sc00544	Forward	8849401	9334205
134	6	p5_sc00772	Forward	9334306	9622884
135	6	p5_sc00165	Forward	9622985	11242830
136	6	p5_sc00114	Forward	11242931	13997525
137	6	p5_sc00377	Forward	13997626	14718163
138	6	p5_sc00470	Forward	14718264	15393205
139	6	p5_sc00357	Forward	15393306	16285621
140	6	p5_sc00948	Forward	16285722	16516012
141	6	p5_sc00107	Forward	16516113	19286325
142	6	p5_sc00225	Forward	19286426	20594146
143	6	p5_sc11192	Forward	20594247	20598130
144	6	p5_sc00313	Reverse	20598231	21504981
145	6	p5_sc00168	Forward	21505082	23400907
146	6	p5_sc00160	Forward	23401008	25641280
147	6	p5_sc00214	Forward	25641381	26817640
148	6	p5_sc01764	Forward	26817741	26887083
149	6	p5_sc00204	Reverse	26887184	28144014
150	6	p5_sc00061	Forward	28144115	32172655
151	6	p5_sc00167	Forward	32172756	34142260
152	6	p5_sc00254	Forward	34142361	35125922
153	6	p5_sc00116	Forward	35126023	37398717
154	6	p5_sc16149	Forward	37398818	37401934
155	6	p5_sc00310	Forward	37402035	38197271
156	6	p5_sc00018	Forward	38197372	44357769
157	7	p5_sc00039	Forward	1	4378706
158	7	p5_sc00135	Forward	4378807	6439792
159	7	p5_sc00050	Forward	6439893	10541655
160	7	p5_sc00058	Reverse	10541756	14317089
161	7	p5_sc00031	Reverse	14317190	19591789
162	7	p5_sc00149	Forward	19591890	21414402
163	7	p5_sc00246	Forward	21414503	22597341
164	7	p5_sc00078	Reverse	22597442	25902647
165	7	p5_sc00052	Reverse	25902748	30228879
166	7	p5_sc00206	Forward	30228980	31676881
167	7	p5_sc00586	Forward	31676982	32040808
168	7	p5_sc00278	Forward	32040909	33052033
169	7	p5_sc00022	Reverse	33052134	38693696
170	7	p5_sc00181	Forward	38693797	40268193
171	7	p5_sc01377	Forward	40268294	40392115
172	7	p5_sc00077	Reverse	40392216	43454766
173	8	p5_sc00080	Reverse	1	3178236
174	8	p5_sc00130	Forward	3178337	5289348
175	8	p5_sc00209	Reverse	5289449	6435917
176	8	p5_sc00091	Forward	6436018	9572190
177	8	p5_sc00874	Forward	9572291	9819728
178	8	p5_sc00261	Reverse	9819829	10915775
179	8	p5_sc01151	Forward	10915876	11048930
180	8	p5_sc00180	Forward	11049031	12751897
181	8	p5_sc03115	Forward	12751998	12779754
182	8	p5_sc01190	Forward	12779855	12951392
183	8	p5_sc00834	Forward	12951493	13269627
184	8	p5_sc01109	Forward	13269728	13538645
185	8	p5_sc00629	Forward	13538746	13891640
186	8	p5_sc00192	Forward	13891741	15470764
187	8	p5_sc00272	Forward	15470865	16465671
188	8	p5_sc00460	Forward	16465772	16970326
189	8	p5_sc03681	Forward	16970427	17011456
190	8	p5_sc00276	Forward	17011557	17980733
191	8	p5_sc10250	Forward	17980834	17984950
192	8	p5_sc11345	Forward	17985051	17988898
193	8	p5_sc00264	Forward	17988999	18860120
194	8	p5_sc00232	Forward	18860221	20140771
195	8	p5_sc00087	Forward	20140872	23016169
196	8	p5_sc00198	Reverse	23016270	24297777
197	8	p5_sc00037	Forward	24297878	28946511
198	8	p5_sc00020	Forward	28946612	34417606
199	8	p5_sc00019	Forward	34417707	40195399
200	9	p5_sc00177	Forward	1	1613765
201	9	p5_sc00057	Reverse	1613866	5356047
202	9	p5_sc00125	Forward	5356148	7875020
203	9	p5_sc00157	Forward	7875121	10011517
204	9	p5_sc00794	Forward	10011618	10357735
205	9	p5_sc01068	Forward	10357836	10542352
206	9	p5_sc01111	Forward	10542453	10714349
207	9	p5_sc00791	Forward	10714450	10982650
208	9	p5_sc00418	Forward	10982751	11739939
209	9	p5_sc00873	Forward	11740040	12033157
210	9	p5_sc02563	Forward	12033258	12083251
211	9	p5_sc00286	Forward	12083352	13317072
212	9	p5_sc00936	Forward	13317173	13570191
213	9	p5_sc00351	Forward	13570292	14622034
214	9	p5_sc00178	Reverse	14622135	16567606
215	9	p5_sc00256	Forward	16567707	17558000
216	9	p5_sc00117	Forward	17558101	20176913
217	9	p5_sc00006	Forward	20177014	28976213
218	9	p5_sc00045	Reverse	28976314	33086276
219	9	p5_sc00271	Reverse	33086377	33994172
220	9	p5_sc00120	Forward	33994273	36678487
221	9	p5_sc00182	Reverse	36678588	38056896
222	10	p5_sc02748	Forward	1	75453
223	10	p5_sc00112	Forward	75554	2755510
224	10	p5_sc00560	Forward	2755611	3128481
225	10	p5_sc00200	Forward	3128582	4471301
226	10	p5_sc00015	Forward	4471402	10719287
227	10	p5_sc00189	Forward	10719388	12146349
228	10	p5_sc00009	Reverse	12146450	18546627
229	10	p5_sc00004	Forward	18546728	27721264
230	10	p5_sc14646	Forward	27721365	27724664
231	10	p5_sc10740	Forward	27724765	27728750
232	10	p5_sc00217	Forward	27728851	28877602
233	10	p5_sc00074	Reverse	28877703	31890735
234	11	p5_sc00846	Forward	1	295276
235	11	p5_sc00316	Forward	295377	1220338
236	11	p5_sc00147	Forward	1220439	3436018
237	11	p5_sc00442	Forward	3436119	4114269
238	11	p5_sc01088	Forward	4114370	4281122
239	11	p5_sc00788	Forward	4281223	4585881
240	11	p5_sc13354	Forward	4585982	4589456
241	11	p5_sc00274	Reverse	4589557	5686894
242	11	p5_sc00193	Forward	5686995	7046175
243	11	p5_sc00150	Reverse	7046276	9190481
244	11	p5_sc00185	Forward	9190582	10760017
245	11	p5_sc00088	Reverse	10760118	14439242
246	11	p5_sc00002	Reverse	14439343	26850131
247	11	p5_sc00071	Forward	26850232	30068910
248	12	p5_sc00201	Forward	1	1499557
249	12	p5_sc00024	Forward	1499658	7078059
250	12	p5_sc00674	Forward	7078160	7360442
251	12	p5_sc02088	Reverse	7360543	7485020
252	12	p5_sc00257	Forward	7485121	8503830
253	12	p5_sc01901	Forward	8503931	8591181
254	12	p5_sc00062	Forward	8591282	12042403
255	12	p5_sc00197	Forward	12042504	13261420
256	12	p5_sc00423	Forward	13261521	13754994
257	12	p5_sc00122	Reverse	13755095	15827241
258	12	p5_sc00014	Forward	15827342	21905587
259	12	p5_sc00103	Forward	21905688	24143708
260	12	p5_sc00134	Reverse	24143809	25995062
261	12	p5_sc00076	Reverse	25995163	28800575
262	13	p5_sc00236	Reverse	1	1111559
263	13	p5_sc00123	Forward	1111660	3441431
264	13	p5_sc00227	Forward	3441532	4538357
265	13	p5_sc00113	Forward	4538458	7030176
266	13	p5_sc00174	Forward	7030277	8715263
267	13	p5_sc00367	Forward	8715364	9447002
268	13	p5_sc00137	Forward	9447103	11582682
269	13	p5_sc00139	Forward	11582783	13815190
270	13	p5_sc00063	Forward	13815291	17285713
271	13	p5_sc00164	Forward	17285814	18975026
272	13	p5_sc00133	Forward	18975127	20797411
273	13	p5_sc00035	Forward	20797512	25519292
274	13	p5_sc00128	Forward	25519393	27370620
275	13	p5_sc00454	Forward	27370721	27817470
276	14	p5_sc00099	Reverse	1	2552587
277	14	p5_sc09494	Forward	2552688	2557073
278	14	p5_sc00033	Forward	2557174	7191565
279	14	p5_sc00070	Reverse	7191666	10576739
280	14	p5_sc00032	Reverse	10576840	15586050
281	14	p5_sc01195	Forward	15586151	15708230
282	14	p5_sc00108	Forward	15708331	18137625
283	14	p5_sc00414	Forward	18137726	18744392
284	14	p5_sc00040	Forward	18744493	23709034
285	14	p5_sc00542	Forward	23709135	24071882
286	14	p5_sc02564	Forward	24071983	24130262
287	14	p5_sc05933	Forward	24130363	24138705
288	14	p5_sc00897	Forward	24138806	24379743
289	15	p5_sc00381	Forward	1	838558
290	15	p5_sc00323	Forward	838659	1903611
291	15	p5_sc00743	Forward	1903712	2260761
292	15	p5_sc01031	Forward	2260862	2482733
293	15	p5_sc00047	Forward	2482834	6905183
294	15	p5_sc00308	Forward	6905284	7699507
295	15	p5_sc00155	Reverse	7699608	9307191
296	15	p5_sc00011	Forward	9307292	15378125
297	15	p5_sc00049	Forward	15378226	19332906
298	15	p5_sc00036	Forward	19333007	24314465
299	16	p5_sc00017	Reverse	1	5464053
300	16	p5_sc00224	Forward	5464154	6774443
301	16	p5_sc00081	Forward	6774544	9806800
302	16	p5_sc00053	Forward	9806901	13731596
303	16	p5_sc00169	Forward	13731697	15187134
304	16	p5_sc00013	Forward	15187235	21371083

LINK

Statistic

Overview

Gbrowse