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Genomsawit Website
Official Portal Of
Malaysian Oil Palm Genome Programme (MyOPGP)
Malaysia MPIC MPOB

Oil palm genome overview

Comparison of the Pisifera genome build-5 (P5) to the two genetic maps (T128 and P2) resulted in 16 genetic scaffolds (one per chromosome), which represents; 43% of the P5 build. Listed below are the IDs and orientation of 304 scaffolds that makes up 16 chromosomes uploaded into Gbrowse.

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# Chromosome Scaffold Orientation START END
11p5_sc00105Reverse02454703
21p5_sc00028Forward24547047566748
31p5_sc00126Reverse75681109583911
41p5_sc10869Unknown95839129587863
51p5_sc00059Reverse958786413321067
61p5_sc00166Reverse1332163914789474
71p5_sc00065Reverse1478947518249111
81p5_sc00008Reverse1824932825959863
91p5_sc00175Unknown2596178927841831
101p5_sc00410Reverse2784183228360764
111p5_sc00038Reverse2836237333012552
121p5_sc00027Forward3301269738148633
131p5_sc00609Unknown3814918538487578
141p5_sc00072Reverse3848757941691864
151p5_sc00095Reverse4169186544294258
161p5_sc00118Reverse4429460246883454
171p5_sc00372Unknown4688345547536838
181p5_sc00941Unknown4753690747688503
191p5_sc01856Unknown4768928247775124
201p5_sc00369Unknown4777525548577760
211p5_sc00396Unknown4857815149196890
221p5_sc00026Forward4919725455076921
231p5_sc00589Unknown5507717055450294
241p5_sc00029Reverse5545029560730358
251p5_sc00154Unknown6073096962491573
261p5_sc00159Reverse6249157464351936
271p5_sc00079Unknown6435209067360701
281p5_sc00238Forward6736105768432730
292p5_sc00060Reverse03501730
302p5_sc00263Reverse35031014419461
312p5_sc00051Reverse44206018348578
322p5_sc00146Reverse834857910548717
332p5_sc00043Unknown1054871815247233
342p5_sc00241Unknown1524723416326696
352p5_sc00110Forward1632717318840571
362p5_sc00275Unknown1884110519709716
372p5_sc00012Forward1971023726076254
382p5_sc00571Unknown2607699326406949
392p5_sc00034Forward2640740631341531
402p5_sc00073Forward3134277934590105
412p5_sc00082Unknown3459020537609654
422p5_sc01040Unknown3761023337830708
432p5_sc00055Reverse3783106341512836
442p5_sc00005Forward4151294449735509
452p5_sc00096Reverse4973599052357924
462p5_sc00042Unknown5235866856722337
472p5_sc00173Unknown5672256558236964
482p5_sc00025Forward5823820363800575
492p5_sc00148Forward6380057665554873
503p5_sc00220Forward01184368
513p5_sc00104Forward11848273779097
523p5_sc00001Forward378027025879539
533p5_sc00054Forward2587970829564542
543p5_sc00100Unknown2956509132291643
553p5_sc00066Forward3229175235897785
563p5_sc00606Unknown3589848336191258
573p5_sc00064Unknown3619340539702414
583p5_sc00304Unknown3970257240734448
593p5_sc01468Unknown4073463840922312
603p5_sc00339Unknown4092243341794366
613p5_sc00420Unknown4179436742337138
623p5_sc00152Unknown4233746344216748
633p5_sc00490Unknown4421746144787685
643p5_sc00145Reverse4478804946980664
653p5_sc00124Reverse4698073049450344
663p5_sc00513Unknown4945052749911884
673p5_sc00142Unknown4991255452214090
683p5_sc00041Reverse5221409157142180
693p5_sc00170Unknown5714287558714494
703p5_sc00199Unknown5871529860057642
714p5_sc00179Unknown11241494925
724p5_sc00237Unknown15004802847084
734p5_sc00281Unknown28472103871931
744p5_sc07586Unknown38722493877790
754p5_sc20880Unknown38777913880051
764p5_sc00048Forward38805218108867
774p5_sc00183Unknown81091389480201
784p5_sc00098Unknown948020211939858
794p5_sc00132Unknown1193999014158947
804p5_sc00340Unknown1415911514827376
814p5_sc00230Unknown1482737716201386
824p5_sc00262Unknown1620648917235648
834p5_sc00486Unknown1723690517860581
844p5_sc00345Unknown1786076918640159
854p5_sc00355Unknown1864036719312086
864p5_sc00163Unknown1931262421352789
874p5_sc00153Unknown2135311323353851
884p5_sc36134Unknown2335545423355570
894p5_sc00187Unknown2335720524956450
904p5_sc00385Unknown2495645125652773
914p5_sc00097Forward2565292128323314
924p5_sc00273Unknown2832331529376496
934p5_sc00085Reverse2937649732568934
944p5_sc00140Reverse3256956234355376
954p5_sc00231Forward3435552735436976
964p5_sc00360Unknown3543758436043789
974p5_sc00508Unknown3604384336443995
984p5_sc00016Forward3644399642771555
994p5_sc00348Forward4277155643408359
1004p5_sc00023Forward4340845048649587
1014p5_sc00332Forward4864993249416848
1024p5_sc24556Unknown4941684949419362
1034p5_sc00075Unknown4941936352673066
1044p5_sc20616Unknown5267306752675820
1054p5_sc33237Unknown5267589552677860
1064p5_sc00083Forward5267802055880208
1074p5_sc00205Unknown5588020957247879
1085p5_sc00069Forward03153706
1095p5_sc00121Reverse31539465175913
1105p5_sc00007Forward517591413629204
1115p5_sc00102Unknown1362947016655499
1125p5_sc00184Unknown1665748618314671
1135p5_sc00021Reverse1831535724433538
1145p5_sc00172Unknown2443375226119253
1155p5_sc00468Forward2612078626657870
1165p5_sc00158Forward2665865528536228
1175p5_sc02507Unknown2853658028598658
1185p5_sc01598Unknown2859885828702223
1195p5_sc00056Reverse2870298832714524
1205p5_sc00094Forward3271500735372023
1215p5_sc00979Unknown3537211435641836
1225p5_sc00086Unknown3564183738493462
1235p5_sc00362Unknown3849387339202412
1245p5_sc00003Reverse3920297749145103
1255p5_sc00084Reverse4914544351948735
1266p5_sc00136Unknown01993309
1276p5_sc00127Forward19934774165559
1286p5_sc14825Unknown41655604168831
1296p5_sc00151Unknown41689235937851
1306p5_sc00161Unknown59381117596139
1316p5_sc03190Unknown75961407640566
1326p5_sc00268Unknown76408108848558
1336p5_sc00544Unknown88494409333054
1346p5_sc00772Unknown93339569621459
1356p5_sc00165Unknown962253711241477
1366p5_sc00114Unknown1124216113996457
1376p5_sc00377Unknown1399738114716775
1386p5_sc00470Unknown1471837115391586
1396p5_sc00357Unknown1539200516284320
1406p5_sc00948Unknown1628500616514611
1416p5_sc00107Unknown1651461219284730
1426p5_sc00225Unknown1928490920592545
1436p5_sc11192Unknown2059254620596429
1446p5_sc00313Reverse2059651821502962
1456p5_sc00168Unknown2150318123398654
1466p5_sc00160Unknown2339900725639279
1476p5_sc00214Forward2563928026815096
1486p5_sc01764Unknown2681559826884881
1496p5_sc00204Reverse2688494328140929
1506p5_sc00061Forward2814171632168552
1516p5_sc00167Forward3217254034139759
1526p5_sc00254Forward3413976035123202
1536p5_sc00116Unknown3512332237396016
1546p5_sc16149Unknown3739601737399133
1556p5_sc00310Unknown3739913438194370
1566p5_sc00018Forward3819437144354412
1577p5_sc00039Forward04378247
1587p5_sc00135Forward43789846439691
1597p5_sc00050Forward644069010541454
1607p5_sc00058Reverse1054198514316450
1617p5_sc00031Reverse1431678919591309
1627p5_sc00149Unknown1959138921413686
1637p5_sc00246Unknown2141390222596740
1647p5_sc00078Reverse2259682025901946
1657p5_sc00052Reverse2590194730227824
1667p5_sc00206Unknown3022814931675563
1677p5_sc00586Unknown3167646632039805
1687p5_sc00278Unknown3204077533050550
1697p5_sc00022Reverse3305093338692495
1707p5_sc00181Unknown3869249640266765
1717p5_sc01377Unknown4026752740390714
1727p5_sc00077Reverse4039071543446551
1738p5_sc00080Reverse03178235
1748p5_sc00130Unknown31782365289247
1758p5_sc00209Reverse52896606435543
1768p5_sc00091Forward64357179570823
1778p5_sc00874Unknown95722249819327
1788p5_sc00261Reverse981932810915274
1798p5_sc01151Unknown1091542511048329
1808p5_sc00180Unknown1104833012750921
1818p5_sc03115Unknown1275119712777803
1828p5_sc01190Unknown1277895412950491
1838p5_sc00834Unknown1295119213268626
1848p5_sc01109Unknown1326903613537048
1858p5_sc00629Unknown1353783413890438
1868p5_sc00192Unknown1389053215469463
1878p5_sc00272Unknown1546946416464008
1888p5_sc00460Unknown1646470316968824
1898p5_sc03681Unknown1696894417009855
1908p5_sc00276Unknown1701048017979032
1918p5_sc10250Unknown1797903317983149
1928p5_sc11345Unknown1798369117986876
1938p5_sc00264Unknown1798699818858119
1948p5_sc00232Unknown1887581820138670
1958p5_sc00087Forward2013893723013887
1968p5_sc00198Reverse2301396924295183
1978p5_sc00037Forward2429561228944030
1988p5_sc00020Forward2894411134414449
1998p5_sc00019Forward3441510640192209
2009p5_sc00177Unknown01613764
2019p5_sc00057Reverse16137655355312
2029p5_sc00125Unknown53559477874819
2039p5_sc00157Unknown787482010011216
2049p5_sc00794Unknown1001145810357115
2059p5_sc01068Unknown1035745710541198
2069p5_sc01111Unknown1054197110713674
2079p5_sc00791Unknown1071424210981049
2089p5_sc00418Unknown1098195011739029
2099p5_sc00873Unknown1173926412032140
2109p5_sc02563Unknown1203391912082250
2119p5_sc00286Unknown1208233713315810
2129p5_sc00936Unknown1331606313568864
2139p5_sc00351Unknown1356937114620569
2149p5_sc00178Reverse1462093916565887
2159p5_sc00256Unknown1656620717556499
2169p5_sc00117Forward1755659320174812
2179p5_sc00006Forward2017531328974417
2189p5_sc00045Reverse2897451333084475
2199p5_sc00271Reverse3308447633990819
2209p5_sc00120Unknown3399240536676370
2219p5_sc00182Reverse3667648738053485
22210p5_sc02748Unknown7074768
22310p5_sc00112Unknown755422755409
22410p5_sc00560Unknown27562603127843
22510p5_sc00200Unknown31282814467491
22610p5_sc00015Forward447240410718695
22710p5_sc00189Forward1071941612145553
22810p5_sc00009Reverse1214624718546026
22910p5_sc00004Forward1854602727720374
23010p5_sc14646Unknown2772056427723861
23110p5_sc10740Unknown2772393627727849
23210p5_sc00217Forward2772794928876345
23310p5_sc00074Reverse2887706331889122
23411p5_sc00846Unknown111295135
23511p5_sc00316Unknown2957201218676
23611p5_sc00147Forward12202383435817
23711p5_sc00442Unknown34367284113968
23811p5_sc01088Unknown41140624280721
23911p5_sc00788Unknown42807224584471
24011p5_sc13354Unknown45853814588855
24111p5_sc00274Reverse45888565686193
24211p5_sc00193Forward56861947045077
24311p5_sc00150Reverse70456139189580
24411p5_sc00185Unknown919004010759016
24511p5_sc00088Reverse1076002314438141
24611p5_sc00002Reverse1443814226848930
24711p5_sc00071Unknown2684893130064634
24812p5_sc00201Unknown01499264
24912p5_sc00024Forward14996527077654
25012p5_sc00674Unknown70781287360241
25112p5_sc02088Reverse73604227484528
25212p5_sc00257Unknown74847208503429
25312p5_sc01901Unknown85036878590244
25412p5_sc00062Unknown859114312041545
25512p5_sc00197Unknown1204180313260006
25612p5_sc00423Unknown1326078213754193
25712p5_sc00122Reverse1375419415816301
25812p5_sc00014Forward1582695921904517
25912p5_sc00103Forward2190536824142476
26012p5_sc00134Reverse2414260925993669
26112p5_sc00076Reverse2599414328799190
26213p5_sc00236Reverse9341111091
26313p5_sc00123Forward11115593441330
26413p5_sc00227Forward34413944538156
26513p5_sc00113Unknown45381577029875
26613p5_sc00174Unknown70301338714750
26713p5_sc00367Unknown87150709445967
26813p5_sc00137Unknown944650211581790
26913p5_sc00139Unknown1158216113814335
27013p5_sc00063Unknown1381457817284826
27113p5_sc00164Unknown1728498918973899
27213p5_sc00133Unknown1897799820796410
27313p5_sc00035Forward2079641125518015
27413p5_sc00128Forward2551841727369419
27513p5_sc00454Unknown2736957527815876
27614p5_sc00099Reverse02552586
27714p5_sc09494Unknown25525872556972
27814p5_sc00033Forward25569737191364
27914p5_sc00070Reverse719149210576438
28014p5_sc00032Reverse1057643915585649
28114p5_sc01195Unknown1558624315707729
28214p5_sc00108Unknown1570773018136549
28314p5_sc00414Unknown1813702818743269
28414p5_sc00040Unknown1874420623708042
28514p5_sc00542Forward2370823424069171
28614p5_sc02564Unknown2407098224129105
28714p5_sc05933Unknown2412998224137604
28814p5_sc00897Unknown2413811924377580
28915p5_sc00381Unknown825838557
29015p5_sc00323Unknown8387011902857
29115p5_sc00743Unknown19040782259831
29215p5_sc01031Unknown22606632481100
29315p5_sc00047Unknown24834206904705
29415p5_sc00308Unknown69049397699004
29515p5_sc00155Reverse76992149305939
29615p5_sc00011Forward930680015377152
29715p5_sc00049Forward1537742519331369
29815p5_sc00036Forward1933225524305827
29916p5_sc00224Unknown54640546774294
30016p5_sc00081Forward67743469806599
30116p5_sc00053Unknown980660013729868
30216p5_sc00169Unknown1373129815186732
30316p5_sc00013Unknown1518678621370332
30416p5_sc00017Reverse595463191

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