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Oil palm genome overview

Comparison of the Pisifera genome build-5 (P5) to the two genetic maps (T128 and P2) resulted in 16 genetic scaffolds (one per chromosome), which represents; 43% of the P5 build. Listed below are the IDs and orientation of 304 scaffolds that makes up 16 chromosomes uploaded into Gbrowse.

 Download xlsx format

# Chromosome Scaffold Orientation START END
11p5_sc00105Reverse12454704
21p5_sc00028Forward24548057568064
31p5_sc00126Reverse75681659584112
41p5_sc10869Forward95842139588164
51p5_sc00059Reverse958826513321468
61p5_sc00166Reverse1332156914789975
71p5_sc00065Reverse1479007618249712
81p5_sc00008Reverse1824981325962399
91p5_sc00175Forward2596250027842632
101p5_sc00410Reverse2784273328363273
111p5_sc00038Reverse2836337433013697
121p5_sc00027Forward3301379838149735
131p5_sc00609Forward3814983638488779
141p5_sc00072Reverse3848888041693165
151p5_sc00095Reverse4169326644295753
161p5_sc00118Reverse4429585446884955
171p5_sc00372Forward4688505647538507
181p5_sc00941Forward4753860847690982
191p5_sc01856Forward4769108347776925
201p5_sc00369Forward4777702648580051
211p5_sc00396Forward4858015249199254
221p5_sc00026Forward4919935555079270
231p5_sc00589Forward5507937155452495
241p5_sc00029Reverse5545259660732758
251p5_sc00154Forward6073285962493974
261p5_sc00159Reverse6249407564354590
271p5_sc00079Forward6435469167363561
281p5_sc00238Forward6736366268435666
292p5_sc00060Reverse13503101
302p5_sc00263Reverse35032024420287
312p5_sc00051Reverse44203888348779
322p5_sc00146Reverse834888010549018
332p5_sc00043Forward1054911915247634
342p5_sc00241Forward1524773516327313
352p5_sc00110Forward1632741418841581
362p5_sc00275Forward1884168219710937
372p5_sc00012Forward1971103826077793
382p5_sc00571Forward2607789426407950
392p5_sc00034Forward2640805131342532
402p5_sc00073Forward3134263334591206
412p5_sc00082Forward3459130737611090
422p5_sc01040Forward3761119137832009
432p5_sc00055Reverse3783211041514344
442p5_sc00005Forward4151444549737100
452p5_sc00096Reverse4973720152360268
462p5_sc00042Forward5236036956724265
472p5_sc00173Forward5672436658238765
482p5_sc00025Forward5823886663802476
492p5_sc00148Forward6380257765558141
503p5_sc00220Forward11184827
513p5_sc00104Forward11849283779198
523p5_sc00001Forward377929925879908
533p5_sc00054Forward2588000929565281
543p5_sc00100Forward2956538232292044
553p5_sc00066Forward3229214535898983
563p5_sc00606Forward3589908436194005
573p5_sc00064Forward3619410639703272
583p5_sc00304Forward3970337340735249
593p5_sc01468Forward4073535040923213
603p5_sc00339Forward4092331441795367
613p5_sc00420Forward4179546842338239
623p5_sc00152Forward4233834044217949
633p5_sc00490Forward4421805044789349
643p5_sc00145Reverse4478945046982130
653p5_sc00124Reverse4698223149451849
663p5_sc00513Forward4945195049913995
673p5_sc00142Forward4991409652215791
683p5_sc00041Reverse5221589257144675
693p5_sc00170Forward5714477658717147
703p5_sc00199Forward5871724860060032
714p5_sc00179Forward11495235
724p5_sc00237Forward14953362847310
734p5_sc00281Forward28474113872449
744p5_sc07586Forward38725503878091
754p5_sc20880Forward38781923880921
764p5_sc00048Forward38810228109368
774p5_sc00183Forward81094699480802
784p5_sc00098Forward948090311940559
794p5_sc00132Forward1194066014159915
804p5_sc00340Forward1416001614828277
814p5_sc00230Forward1482837816202387
824p5_sc00262Forward1620248817237116
834p5_sc00486Forward1723721717861853
844p5_sc00345Forward1786195418641460
854p5_sc00355Forward1864156119313487
864p5_sc00163Forward1931358821354613
874p5_sc00153Forward2135471423356507
884p5_sc36134Forward2335660823358719
894p5_sc00187Forward2335882024958251
904p5_sc00385Forward2495835225654674
914p5_sc00097Forward2565477528325315
924p5_sc00273Forward2832541629378597
934p5_sc00085Reverse2937869832571698
944p5_sc00140Reverse3257179934357827
954p5_sc00231Forward3435792835439377
964p5_sc00360Forward3543947836046343
974p5_sc00508Forward3604644436446596
984p5_sc00016Forward3644669742774256
994p5_sc00348Forward4277435743411160
1004p5_sc00023Forward4341126148652488
1014p5_sc00332Forward4865258949419849
1024p5_sc24556Forward4941995049422463
1034p5_sc00075Forward4942256452676267
1044p5_sc20616Forward5267636852679121
1054p5_sc33237Forward5267922252681420
1064p5_sc00083Forward5268152155883709
1074p5_sc00205Forward5588381057251647
1085p5_sc00069Forward13153946
1095p5_sc00121Reverse31540475176014
1105p5_sc00007Forward517611513629577
1115p5_sc00102Forward1362967816657785
1125p5_sc00184Forward1665788618315757
1135p5_sc00021Reverse1831585824434252
1145p5_sc00172Forward2443435326120492
1155p5_sc00468Forward2612059326659009
1165p5_sc00158Forward2665911028537380
1175p5_sc02507Forward2853748128599610
1185p5_sc01598Forward2859971128703878
1195p5_sc00056Reverse2870397932716047
1205p5_sc00094Forward3271614835373314
1215p5_sc00979Forward3537341535643137
1225p5_sc00086Forward3564323838494863
1235p5_sc00362Forward3849496439204040
1245p5_sc00003Reverse3920414149146760
1255p5_sc00084Reverse4914686151955539
1266p5_sc00136Forward11993310
1276p5_sc00127Forward19934114165660
1286p5_sc14825Forward41657614169033
1296p5_sc00151Forward41691345938308
1306p5_sc00161Forward59384097596540
1316p5_sc03190Forward75966417641310
1326p5_sc00268Forward76414118849300
1336p5_sc00544Forward88494019334205
1346p5_sc00772Forward93343069622884
1356p5_sc00165Forward962298511242830
1366p5_sc00114Forward1124293113997525
1376p5_sc00377Forward1399762614718163
1386p5_sc00470Forward1471826415393205
1396p5_sc00357Forward1539330616285621
1406p5_sc00948Forward1628572216516012
1416p5_sc00107Forward1651611319286325
1426p5_sc00225Forward1928642620594146
1436p5_sc11192Forward2059424720598130
1446p5_sc00313Reverse2059823121504981
1456p5_sc00168Forward2150508223400907
1466p5_sc00160Forward2340100825641280
1476p5_sc00214Forward2564138126817640
1486p5_sc01764Forward2681774126887083
1496p5_sc00204Reverse2688718428144014
1506p5_sc00061Forward2814411532172655
1516p5_sc00167Forward3217275634142260
1526p5_sc00254Forward3414236135125922
1536p5_sc00116Forward3512602337398717
1546p5_sc16149Forward3739881837401934
1556p5_sc00310Forward3740203538197271
1566p5_sc00018Forward3819737244357769
1577p5_sc00039Forward14378706
1587p5_sc00135Forward43788076439792
1597p5_sc00050Forward643989310541655
1607p5_sc00058Reverse1054175614317089
1617p5_sc00031Reverse1431719019591789
1627p5_sc00149Forward1959189021414402
1637p5_sc00246Forward2141450322597341
1647p5_sc00078Reverse2259744225902647
1657p5_sc00052Reverse2590274830228879
1667p5_sc00206Forward3022898031676881
1677p5_sc00586Forward3167698232040808
1687p5_sc00278Forward3204090933052033
1697p5_sc00022Reverse3305213438693696
1707p5_sc00181Forward3869379740268193
1717p5_sc01377Forward4026829440392115
1727p5_sc00077Reverse4039221643454766
1738p5_sc00080Reverse13178236
1748p5_sc00130Forward31783375289348
1758p5_sc00209Reverse52894496435917
1768p5_sc00091Forward64360189572190
1778p5_sc00874Forward95722919819728
1788p5_sc00261Reverse981982910915775
1798p5_sc01151Forward1091587611048930
1808p5_sc00180Forward1104903112751897
1818p5_sc03115Forward1275199812779754
1828p5_sc01190Forward1277985512951392
1838p5_sc00834Forward1295149313269627
1848p5_sc01109Forward1326972813538645
1858p5_sc00629Forward1353874613891640
1868p5_sc00192Forward1389174115470764
1878p5_sc00272Forward1547086516465671
1888p5_sc00460Forward1646577216970326
1898p5_sc03681Forward1697042717011456
1908p5_sc00276Forward1701155717980733
1918p5_sc10250Forward1798083417984950
1928p5_sc11345Forward1798505117988898
1938p5_sc00264Forward1798899918860120
1948p5_sc00232Forward1886022120140771
1958p5_sc00087Forward2014087223016169
1968p5_sc00198Reverse2301627024297777
1978p5_sc00037Forward2429787828946511
1988p5_sc00020Forward2894661234417606
1998p5_sc00019Forward3441770740195399
2009p5_sc00177Forward11613765
2019p5_sc00057Reverse16138665356047
2029p5_sc00125Forward53561487875020
2039p5_sc00157Forward787512110011517
2049p5_sc00794Forward1001161810357735
2059p5_sc01068Forward1035783610542352
2069p5_sc01111Forward1054245310714349
2079p5_sc00791Forward1071445010982650
2089p5_sc00418Forward1098275111739939
2099p5_sc00873Forward1174004012033157
2109p5_sc02563Forward1203325812083251
2119p5_sc00286Forward1208335213317072
2129p5_sc00936Forward1331717313570191
2139p5_sc00351Forward1357029214622034
2149p5_sc00178Reverse1462213516567606
2159p5_sc00256Forward1656770717558000
2169p5_sc00117Forward1755810120176913
2179p5_sc00006Forward2017701428976213
2189p5_sc00045Reverse2897631433086276
2199p5_sc00271Reverse3308637733994172
2209p5_sc00120Forward3399427336678487
2219p5_sc00182Reverse3667858838056896
22210p5_sc02748Forward175453
22310p5_sc00112Forward755542755510
22410p5_sc00560Forward27556113128481
22510p5_sc00200Forward31285824471301
22610p5_sc00015Forward447140210719287
22710p5_sc00189Forward1071938812146349
22810p5_sc00009Reverse1214645018546627
22910p5_sc00004Forward1854672827721264
23010p5_sc14646Forward2772136527724664
23110p5_sc10740Forward2772476527728750
23210p5_sc00217Forward2772885128877602
23310p5_sc00074Reverse2887770331890735
23411p5_sc00846Forward1295276
23511p5_sc00316Forward2953771220338
23611p5_sc00147Forward12204393436018
23711p5_sc00442Forward34361194114269
23811p5_sc01088Forward41143704281122
23911p5_sc00788Forward42812234585881
24011p5_sc13354Forward45859824589456
24111p5_sc00274Reverse45895575686894
24211p5_sc00193Forward56869957046175
24311p5_sc00150Reverse70462769190481
24411p5_sc00185Forward919058210760017
24511p5_sc00088Reverse1076011814439242
24611p5_sc00002Reverse1443934326850131
24711p5_sc00071Forward2685023230068910
24812p5_sc00201Forward11499557
24912p5_sc00024Forward14996587078059
25012p5_sc00674Forward70781607360442
25112p5_sc02088Reverse73605437485020
25212p5_sc00257Forward74851218503830
25312p5_sc01901Forward85039318591181
25412p5_sc00062Forward859128212042403
25512p5_sc00197Forward1204250413261420
25612p5_sc00423Forward1326152113754994
25712p5_sc00122Reverse1375509515827241
25812p5_sc00014Forward1582734221905587
25912p5_sc00103Forward2190568824143708
26012p5_sc00134Reverse2414380925995062
26112p5_sc00076Reverse2599516328800575
26213p5_sc00236Reverse11111559
26313p5_sc00123Forward11116603441431
26413p5_sc00227Forward34415324538357
26513p5_sc00113Forward45384587030176
26613p5_sc00174Forward70302778715263
26713p5_sc00367Forward87153649447002
26813p5_sc00137Forward944710311582682
26913p5_sc00139Forward1158278313815190
27013p5_sc00063Forward1381529117285713
27113p5_sc00164Forward1728581418975026
27213p5_sc00133Forward1897512720797411
27313p5_sc00035Forward2079751225519292
27413p5_sc00128Forward2551939327370620
27513p5_sc00454Forward2737072127817470
27614p5_sc00099Reverse12552587
27714p5_sc09494Forward25526882557073
27814p5_sc00033Forward25571747191565
27914p5_sc00070Reverse719166610576739
28014p5_sc00032Reverse1057684015586050
28114p5_sc01195Forward1558615115708230
28214p5_sc00108Forward1570833118137625
28314p5_sc00414Forward1813772618744392
28414p5_sc00040Forward1874449323709034
28514p5_sc00542Forward2370913524071882
28614p5_sc02564Forward2407198324130262
28714p5_sc05933Forward2413036324138705
28814p5_sc00897Forward2413880624379743
28915p5_sc00381Forward1838558
29015p5_sc00323Forward8386591903611
29115p5_sc00743Forward19037122260761
29215p5_sc01031Forward22608622482733
29315p5_sc00047Forward24828346905183
29415p5_sc00308Forward69052847699507
29515p5_sc00155Reverse76996089307191
29615p5_sc00011Forward930729215378125
29715p5_sc00049Forward1537822619332906
29815p5_sc00036Forward1933300724314465
29916p5_sc00017Reverse15464053
30016p5_sc00224Forward54641546774443
30116p5_sc00081Forward67745449806800
30216p5_sc00053Forward980690113731596
30316p5_sc00169Forward1373169715187134
30416p5_sc00013Forward1518723521371083

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